Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID2608_PtRNAdb
Plant SourceAegilops tauschii     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-4.trna308
tRNA locuschr-4 : 143419149 - 143419078 (-)
IsoacceptorPro

[NOTE: User can view the results of the consensus based study of all the tRNAs of Pro isoacceptor in Aegilops_tauschii plant by clicking on the isoacceptor]

IsodecoderAGG

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGG isodecoder in Aegilops_tauschii plant by clicking on the isodecoder]

tRNA Sequence
AGGTATTTGGTCTAATGGTATGATTCTCGCTTAGGGTGTGAGAGGTCCTGAGTTCAGTTCTCGGAATGCCCC
tRNA secondary structure
.>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
Upstream sequence (upto 100nt)
CTAGCAAAAAGGGGTCAAAACTTTCATGACTTGTATGTAGAGCGAGAACACAAACTTTAATGTTTTTGCTATTCTAATTCCTTAATTATCACCAAGTTGA
Downstream sequence (upto 100nt)
GCCGTTTTTACATTGTTGTCAGTAATCAATGTGAAGTTTAATCTGCGTCAGACTCTGAATAATCTTAATTTTGTGCGAAATTTCACTCTCGTCTAGGTTA
Mature tRNA
AGGUAUUUGGUCUAAUGGUAUGAUUCUCGCUUAGGGUGUGAGAGGUCCUGAGUUCAGUUCUCGGAAUGCCCC
HMM Score14.90
Secondary structure Score26.40