Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID25897_PtRNAdb
Plant SourceCapsicum baccatum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-10.trna91
tRNA locuschr-10 : 164522932 - 164522861 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Capsicum_baccatum plant by clicking on the isoacceptor]

IsodecoderGAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAC isodecoder in Capsicum_baccatum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGAGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAATCATTAGTTCGAGCCTGATTATCCCTA
tRNA secondary structure
>>.>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<.<<.
Upstream sequence (upto 100nt)
TGAAATTTAATATTAAAAAATTAATCATATTTTAAAAAAAAAAAAGTAAAATTGACATTTATAATATGTCTGTTTCAATTGCTTCAACCGTAATTGGGGA
Downstream sequence (upto 100nt)
AGCCCAATGTGAGTTTTTCTAGTTGGATTTGCTCCCCCGCCGTCGTTCAATGAGAATGGATAAGAGGCTCGTGGGATTGACGTGAGGGGGCAATGTTGAT
Mature tRNA
AGAGAUAUAACUCAGCGGUAGAGUGUCACCUUGACGUGGUGGAAAUCAUUAGUUCGAGCCUGAUUAUCCCUA
HMM Score12.80
Secondary structure Score30.40