Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID25810_PtRNAdb
Plant SourceCapsicum annuum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-9.trna74
tRNA locuschr-9 : 75679906 - 75679834 (-)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Capsicum_annuum plant by clicking on the isoacceptor]

IsodecoderAGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGC isodecoder in Capsicum_annuum plant by clicking on the isodecoder]

tRNA Sequence
GGAGATGTAGCTCAGATGCTAGAGCGCTTGCTTAGCATGCGAGAGGTACGGAGATCGATACCCCGCTTCTCCA
tRNA secondary structure
>>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<.<<<<<.
Upstream sequence (upto 100nt)
AAATATTTTTCAAAACATTTATCCAACCTAACATGAAAAAATTAAAAAATTGAAGAAAATATTTTTCTTAGTACCAAACACATTATATATAAATGCAAAT
Downstream sequence (upto 100nt)
GTTTCTTCAAAATTTTTCCCTTGTTCTCGTATTTTAGTTCTTGCTTTAGAACAATGCTAGCTAATTGCTGGTTGCTGAAAGGCAATACTTTGAAATTTGT
Mature tRNA
GGAGAUGUAGCUCAGAUGCUAGAGCGCUUGCUUAGCAUGCGAGAGGUACGGAGAUCGAUACCCCGCUUCUCCA
HMM Score26.90
Secondary structure Score13.70