Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID25348_PtRNAdb
Plant SourceCapsicum annuum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-4.trna53
tRNA locuschr-4 : 225403626 - 225403544 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Capsicum_annuum plant by clicking on the isoacceptor]

IsodecoderTTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTT isodecoder in Capsicum_annuum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGTCCAAGAGCTCGGTTTATGGAGGAGCGCTCGATGTTTATAAGCAGTCGAGAGGTCGGTGGTTCGAATCCACCTGGATCCT
tRNA secondary structure
>>>>>>>...>>>>...........<<<<.>>>>>.............<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ACTGTGTTACAAAAGAGCTCTTTTTACACAAATGTGATGCCCTTTAATAACAACGAACGAGTTACTGTACAGTATTGTTTTTCTCAATTCGCTGCTGAAT
Downstream sequence (upto 100nt)
TATTTAGATGGTGTGTTTTTCTGATAGCTAAATGTTATTTGATTTGAGAAACTTCACTCCAAACGGTTTTTTATGATATAAGATTTGATTATCTTAGTGT
Mature tRNA
GGGUCCAAGAGCUCGGUUUAUGGAGGAGCGCUCGAUGUUUAGUCGAGAGGUCGGUGGUUCGAAUCCACCUGGAUCCU
Intron Sequence
TAAGCA
Intron Position42-47
Infernal Score23.4
HMM Score14.60
Secondary structure Score8.80