Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID24931_PtRNAdb
Plant SourceCapsicum annuum     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-11.trna9
tRNA locuschr-11 : 4476837 - 4476910 (+)
IsoacceptorHis

[NOTE: User can view the results of the consensus based study of all the tRNAs of His isoacceptor in Capsicum_annuum plant by clicking on the isoacceptor]

IsodecoderATG

[NOTE: User can view the results of the consensus based study of all the tRNAs of ATG isodecoder in Capsicum_annuum plant by clicking on the isodecoder]

tRNA Sequence
GCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTATGAATCCACCACGCGCGGGTTCACTCCCCGTCGTTCACC
tRNA secondary structure
>.>>>>>..>>>...........<<<.>>>>>.......<<<<.<....>>>>>.......<<<<<<<<<<.<.
Upstream sequence (upto 100nt)
ACTATAGTGATGGAAAAAGCTTCTATTTGATAAGCGGTTATAGGGGAGTTCAGAAAGGGTCTGATCGTAGATAGAGACTTCAACCTGTGTGGGGGTAGGA
Downstream sequence (upto 100nt)
CATCAATAAATGGACCGTTTGTTTCGTAGACACAAGACAAACCTAGAAAGCATTTTTTCTGCAAGTCATCGCGAAGCTTTCAAACGCATCCAAGCAATTG
Mature tRNA
GCGGAUGUAGCCAAGUGGAUCAAGGCAGUGGAUUAUGAAUCCACCACGCGCGGGUUCACUCCCCGUCGUUCACC
HMM Score23.20
Secondary structure Score12.20