Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID24690_PtRNAdb
Plant SourceCannabis sativa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-7.trna22
tRNA locuschr-7 : 11893877 - 11893799 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Cannabis_sativa plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Cannabis_sativa plant by clicking on the isodecoder]

tRNA Sequence
GCCTAACTTTACTTAACTTAGTGGTTAGAGTATTGCTTTCATACGACGAGAGTCATTGGTTCAAATTCAATAGTAGGTA
tRNA secondary structure
>>>>......>>>..>>>>........<<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TACTCATTACATTCGGGGACAACTAAGATGTATCACGATGTGAAAACCCTATACTGGTGGCCAGGTATGAAGAGTGATATAGTGGAATACGTGTCAAAAT
Downstream sequence (upto 100nt)
GAACTTATTAGATAACAACGTCACTAGTATATAATGAGTTCTTATACTCATTCGCTTTTATTGATTTTGTATATTTTTCATCCTACTCTATTAAATTTTC
Mature tRNA
GCCUAACUUUACUUAACUUAGUGGUUAGAGUAUUGCUUUCAUACGACGAGAGUCAUUGGUUCAAAUUCAAUAGUAGGUA
HMM Score12.50
Secondary structure Score14.80