Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID24614_PtRNAdb
Plant SourceCannabis sativa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna51
tRNA locuschr-5 : 67962482 - 67962411 (-)
IsoacceptorGln

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gln isoacceptor in Cannabis_sativa plant by clicking on the isoacceptor]

IsodecoderTTG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTG isodecoder in Cannabis_sativa plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
TAGAGTATAGCCAAGTGGTAAGGCATCAGCTTTTGGTACCAGCATGCAAAGGTTCGAATCCTTTTACTCCAG
tRNA secondary structure
>.>>>>>..>>>.........<<<.>..>>...........<<<...>>>>>.......<<<<<<<<<<.<.
Upstream sequence (upto 100nt)
TAATCACGAATCCCCGTGTTCTTATCTTGCGCGGCTCGTTCTTCGAGCTCTGCTTCTCCCTTCCACCTCTCCTTGTTCTACCGTCCAAAATAAGGCCGTA
Downstream sequence (upto 100nt)
ATTATGAACACTCGATCAGATCTGTCAAGAACGAGCTGAAGACTACAGGGGAAGCGACTGACTGCAGTCCCTGAGCCCACAAGCCAAAAGTTTTACTTGA
Mature tRNA
UAGAGUAUAGCCAAGUGGUAAGGCAUCAGCUUUUGGAGCAUGCAAAGGUUCGAAUCCUUUUACUCCAG
Intron Sequence
TACC
Intron Position37-40
Infernal Score31.3
HMM Score16.30
Secondary structure Score15.00