Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID24522_PtRNAdb
Plant SourceCannabis sativa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-3.trna7
tRNA locuschr-3 : 25306776 - 25306846 (+)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Cannabis_sativa plant by clicking on the isoacceptor]

IsodecoderGCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCC isodecoder in Cannabis_sativa plant by clicking on the isodecoder]

tRNA Sequence
GTGAATATAATTGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGATGTGGGCTCGATTCCCGCTATCCACC
tRNA secondary structure
>>>.>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<.<<<.
Upstream sequence (upto 100nt)
AAATATATATAAATTATAAATAGAAATGCTAAATAGAGAGTATTTATCATCGCTCGGCCAAAATATGATCCATACTCTTATATAATGATCAAAAACAAGT
Downstream sequence (upto 100nt)
CATGATAATGGGCTTAATGTATTTAATTTACTACGATAAATGATTAAATATAGTTGATTACAATAGTATATTGGTTCTTTCCTCCCACCCGAAAAGGAGA
Mature tRNA
GUGAAUAUAAUUGAAUGGUAAAAUUUCUCUUUGCCAAGGAGAAGAUGUGGGCUCGAUUCCCGCUAUCCACC
HMM Score17.20
Secondary structure Score26.00