Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID23867_PtRNAdb
Plant SourceCamelina sativa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna54
tRNA locuschr-6 : 21443774 - 21443694 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Camelina_sativa plant by clicking on the isoacceptor]

IsodecoderTTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTT isodecoder in Camelina_sativa plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGCTCGCTTAGCTCAGCGGTCAGAGCACCACATCTTTATTTTTTTGTGTGGTAGAGATCGGTTCGACTCCGATAGCAGCTT
tRNA secondary structure
>>>>.>>>..>>>>........<<<<.>>>>>..............<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AATGTATTGTTCCTTGTTGATAATCAAAGTTGTGGGAACTCTCTCGGATTTGTTTCTGTGGAGTTCCTTGGAATTGCTGATTATTACTTGTATGAATTTA
Downstream sequence (upto 100nt)
CTTACTTACTGTGATTGTTTTGTTTTGTTTTGAGACACATTAATTTCATATTGATTATATATATGTCTACTGTCAGTGTTGATTTGACTCATTAATAATA
Mature tRNA
AGCUCGCUUAGCUCAGCGGUCAGAGCACCACAUCUUUAGUGUGGUAGAGAUCGGUUCGACUCCGAUAGCAGCUU
Intron Sequence
TTTTTTT
Intron Position39-45
Infernal Score33.6
HMM Score21.20
Secondary structure Score12.40