Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID23805_PtRNAdb
Plant SourceCamelina sativa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna83
tRNA locuschr-5 : 22874082 - 22873925 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Camelina_sativa plant by clicking on the isoacceptor]

IsodecoderTAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAT isodecoder in Camelina_sativa plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGTCTCGTAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCCGAGACCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>...........................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GGATAATCACACTTATTTCATAACACAAATAATGTATTCATTTATCTTGTTTTTCTTTAGGGCGTAAAAGAAAATTTTAAATACAAAACATAAAACATCT
Downstream sequence (upto 100nt)
AGATTTTAAGTTTTTCATGTTAAAATTACCAATCTTTTAAGTCTTGCCCATTTGTGCTTAAAGAGATCAAAATGACTATCGGTTACGGTATCAATCTCTA
Mature tRNA
GGUCUCGUAGCUCAGUUGGUUAGAGCGUUGGUCUUAUGAGCCGAAGGUCGCGGGUUCGAGCCCCGCCGAGACCA
Intron Sequence
AGCCGAAGGTCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCTTATG
Intron Position39-122
Infernal Score75.6
HMM Score60.00
Secondary structure Score15.60