Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID23463_PtRNAdb
Plant SourceCamelina sativa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna80
tRNA locuschr-2 : 17175057 - 17174828 (-)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Camelina_sativa plant by clicking on the isoacceptor]

IsodecoderCAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAA isodecoder in Camelina_sativa plant by clicking on the isodecoder]

tRNA Sequence
GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGATTTACTGGGCGTGGGTTCAAATCCCACTTCTGACA
tRNA secondary structure
>>>>>>>..>>>...........<<<...>>>...................................................................................................................................................................<<<.......>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CAAAAAGTCTCGAAGTCGAAAGTATCTCCATATGCACAAATACTTTTACCGAGTCTTGTTAATGATACTTATTCATGTTATGTAAACATTACATCAAAAA
Downstream sequence (upto 100nt)
GTTCTTTTTTTTAGTTCTCTCTTTTAGATCAGACATGTGGTTGATTTAAAACCTTCAAATTATTGTCTCTTTTTTTAGTATTCAAGTTTGTAACAAATTT
Mature tRNA
GUCAGGGUGGCCGAGUGGUCUAAGGCGCCAGACUCAAGAUUUACUGGGCGUGGGUUCAAAUCCCACUUCUGACA
Intron Sequence
TTCTGGTCCTCTAACGAGGGCGTGGTAACAATCCCACTTCTGACAATTCTTTTTTTTTTATAGTTCTCTCTTTTAAATCAGACATATGGTTTATTAAAAACTTCAATTTATAGTCTCTTTTTTTTTTATCTGTTCAAGTTTGTAACAAATTTTATT
Intron Position39-194
Infernal Score49.3
HMM Score42.20
Secondary structure Score7.10