Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID23423_PtRNAdb
Plant SourceCamelina sativa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-2.trna44
tRNA locuschr-2 : 25917666 - 25917863 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Camelina_sativa plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Camelina_sativa plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTAGCTCAGTTGGTAGAGCGGAAGACTGTAGTGTTAGCAGACAATCTTTAGGTCGCTGGTTCAATCCGGCAGGTCGGATTTTTAAAATTTTAATTTTTCCTATAATGTTAGTAATTGACCGTTTTACTCCTTTGACTGTAGTGTTAGCAGTCAATCTTTTATAGGCCGCTGGTTCGATTCCAGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.................................................................................................................................<<<<<........>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TTTGGTTATGCGTTTATATATGACACTAGTGTTTGATTTGTCACAACTAATTAAGACATGTTTAGATTAAATGTTTTTAGTCTGTGGTTATAATCAGTAA
Downstream sequence (upto 100nt)
TTTTTTAAAATTTTAATTTTTCCCATAATGTTAGTAATTGACCGTTTTAACCCTTTGTTACTATCAGTTCCCACTTTTACTGGAATTGTAAAAAATTTAA
Mature tRNA
CCGACCUUAGCUCAGUUGGUAGAGCGGAAGACUGUAGAUCUUUUAUAGGCCGCUGGUUCGAUUCCAGCAGGUCGGA
Intron Sequence
TGTTAGCAGACAATCTTTAGGTCGCTGGTTCAATCCGGCAGGTCGGATTTTTAAAATTTTAATTTTTCCTATAATGTTAGTAATTGACCGTTTTACTCCTTTGACTGTAGTGTTAGCAGTCA
Intron Position38-159
Infernal Score64.5
HMM Score33.40
Secondary structure Score31.10