Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID23235_PtRNAdb
Plant SourceCamelina sativa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-19.trna1
tRNA locuschr-19 : 456233 - 456306 (+)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Camelina_sativa plant by clicking on the isoacceptor]

IsodecoderAAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAT isodecoder in Camelina_sativa plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGCCCATTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAAGTTCGAAACCTGCATGGGCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<.
Upstream sequence (upto 100nt)
GACAAGTTTATGGTACTTGTAGCAACGATTAAACAGAAATAACGGAAAACATACGGAAAAGATAAGCAAATCTGAAAACATAATCAAAACATAAGCAAAT
Downstream sequence (upto 100nt)
CTTTTTTGTAATTTATTTAATCTGGTCTTTATAATTTTCTTTTGGTCTAAAACAAATACCTGACTTTTTATTTATATATATTCACTAGATTTGGACCCGC
Mature tRNA
GGCCCAUUAGCUCAGUUGGUUAGAGCGUCGUGCUAAUAACGCGAAGGUCGCAAGUUCGAAACCUGCAUGGGCCA
HMM Score55.70
Secondary structure Score22.00