Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID22592_PtRNAdb
Plant SourceCamelina sativa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-13.trna24
tRNA locuschr-13 : 7834749 - 7834820 (+)
IsoacceptorTrp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Trp isoacceptor in Camelina_sativa plant by clicking on the isoacceptor]

IsodecoderCCA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CCA isodecoder in Camelina_sativa plant by clicking on the isodecoder]

tRNA Sequence
GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCCATTCACGTCGGGTTCA
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CCAGTTGATGAACTATTTATAGTACACTTGATTACGAGCAAGTAAAAGTAAGTTGAGCAATTAGTCATCTCATAAAAGTAAGTTGAGCAATTAGTCATCC
Downstream sequence (upto 100nt)
ATTCCCCGAACATTTAATATCCGGAAATTTTTTTTTCGGTTGCCTTTGCTGCATTTATCCCCTGGTTCAGGATTCTTATTACTCTTAACCGCGAAATTCA
Mature tRNA
GGAUCCGUGGCGCAAUGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCCAUUCACGUCGGGUUCA
HMM Score43.40
Secondary structure Score24.50