Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID2179_PtRNAdb
Plant SourceAegilops tauschii     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3.trna387
tRNA locuschr-3 : 422280260 - 422280046 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Aegilops_tauschii plant by clicking on the isoacceptor]

IsodecoderCAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAC isodecoder in Aegilops_tauschii plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GTCTGGGTGGTGTAGTTGGTTATCACGTTAGTCTCACACACTAAGGGGGTGTTCGGAGTCCCTCCGCTCCGGACTCAGCTCCGCGGAGCTGACGGAGCTGCAAGCTAAAATCATGGAGTTGAAAAGTAGGTGCTCCACAAATTCCGTAATTTCGCAGAACTGGTGGAGAGCCGAACAGGCCCTAAAGGTCCCCAGTTCGAACCTGGGCTTAGACA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>......................................................................................................................................................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATGTCAAAAGAAGTTTTCAACGTGATTATTTGGTTTAAGCTTGCAAAAGCCGTGTAAGTAAGTTACTAATATAGCAATACTTGGCTCAGGAAAGCATCTT
Downstream sequence (upto 100nt)
AACTCTTTTTTTTGATATTTTCATCAGTCGTCACGTTTACGTTTTAGAACTTTGAACCCCTCAAAGATGGTGCACGTTGGATCCTCAAAAAAAAAAAAGA
Mature tRNA
GUCUGGGUGGUGUAGUUGGUUAUCACGUUAGUCUCACACCCUAAAGGUCCCCAGUUCGAACCUGGGCUUAGACA
Intron Sequence
CACTAAGGGGGTGTTCGGAGTCCCTCCGCTCCGGACTCAGCTCCGCGGAGCTGACGGAGCTGCAAGCTAAAATCATGGAGTTGAAAAGTAGGTGCTCCACAAATTCCGTAATTTCGCAGAACTGGTGGAGAGCCGAACAGG
Intron Position39-179
Infernal Score57.7
HMM Score38.30
Secondary structure Score19.40