Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID21783_PtRNAdb
Plant SourceBrassica rapa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-A9.trna154
tRNA locuschr-A9 : 10789008 - 10788927 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Brassica_rapa plant by clicking on the isoacceptor]

IsodecoderAGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGA isodecoder in Brassica_rapa plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTGGACGTGCCTGAGTGGTTATCGGGCATGACTAGAAATCATGTTGGCTTTGCCCGTACAGGTTCGAATCCTGCTGTTCACG
tRNA secondary structure
>>>>>>>..>>.>........<.<<.>>>>>.......<<<<<..>>......<<...>>>>.......<<<<.<<<<<<<.
Upstream sequence (upto 100nt)
ATCCTTTACACTCGTCTACTTCTCCGAAAAATCAACAACAATGATTTAGAGTATTATGTTGATTACTCTATAGTAGAACAATGATCCAGTTAATTATTAA
Downstream sequence (upto 100nt)
CTTTTGAGAAACCGGGGTTTTAGAAAATACGACTATTTTATAATTTTTTTTCTAATGATAGTTTAATTTTTACACATAGGTAAATTAGGAAATGTTACAA
Mature tRNA
GUGGACGUGCCUGAGUGGUUAUCGGGCAUGACUAGAAAUCAUGUUGGCUUUGCCCGUACAGGUUCGAAUCCUGCUGUUCACG
HMM Score34.90
Secondary structure Score13.30