Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID21422_PtRNAdb
Plant SourceBrassica rapa     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-A6.trna11
tRNA locuschr-A6 : 3356442 - 3356774 (+)
IsoacceptorPro

[NOTE: User can view the results of the consensus based study of all the tRNAs of Pro isoacceptor in Brassica_rapa plant by clicking on the isoacceptor]

IsodecoderAGG

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGG isodecoder in Brassica_rapa plant by clicking on the isodecoder]

tRNA Sequence
GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCCCT
tRNA secondary structure
>>>>>>>..>>>.........<<<.>>>>>............................................................................................................................................................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AACCAATTGGTGAACCGATTATAGTTACTGCAAAGTAAACAAGATATGTTTTATGTAGGTTGATTATTGTCAAAGGCATATTTTAAGGAAACACGCAAAA
Downstream sequence (upto 100nt)
AGTTTAAAAATATTTTAGTTCAATTTTAGATTCCAATTTGCAGAAGTATTTGGACCACTGCTGAGTTTTTTTTTTACTTTTTGAATTTCTTTATCACAAA
Mature tRNA
GGGCAUUUGGUCUAGUGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGAGUUCAAUUCUCGGAAUGCCCU
Intron Sequence
CAGGATTAACAGGGACGCTTGGAGAAGTGCTAGAGGGTGGGCTCCACAGCAAAAGACGAAGCAGCGACGCCAAAGACGTCAGATTAAGCGTCGGGTTTTGTTGGGTCTTGTACTGTTTCACGGGCTTAACTAACACGTGGCAGTCCGCGATTGACTCGTTTTTAATTTTTTTCTTTTTTTTAAAAAAATCAGACAAAAAACTGAAAAAAATAAAATAATAAGCACTCCACTTGGGGTGTTAGGTTAATGGTGCTCTTAGGG
Intron Position37-297
Infernal Score52.8
HMM Score20.10
Secondary structure Score32.70