Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID2108_PtRNAdb
Plant SourceAegilops tauschii     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3.trna313
tRNA locuschr-3 : 507512317 - 507512402 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Aegilops_tauschii plant by clicking on the isoacceptor]

IsodecoderTAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAG isodecoder in Aegilops_tauschii plant by clicking on the isodecoder]

tRNA Sequence
GACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAAAGGGCGTGGGCGTGGGTTCAAACCCCACAGCTGTCA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.................>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TCATCGTTTAATTTGGAAAGCTGTGTGGTGCGCTAAAATGATAAACAGAGTACTAATCGTGCTAAGGATATAAACGAGAACGTGTAAATTTAGGAACAAA
Downstream sequence (upto 100nt)
CATATTTTTTTCCCGTTTTTCTCTTTTGATTTTAGGTATTTTTAAAAAATTTCGTCATTTTTCAAGTCCATGGATGGAGGCATGGAGCAGTAGTTTGTAA
Mature tRNA
GACAGUUUGGCCGAGUGGUCUAAGGCGCCAGAUUUAGGCUCUGGUCCGAAAGGGCGUGGGCGUGGGUUCAAACCCCACAGCUGUCA
HMM Score45.50
Secondary structure Score20.40