Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID2084_PtRNAdb
Plant SourceAegilops tauschii     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3.trna287
tRNA locuschr-3 : 493439884 - 493440085 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Aegilops_tauschii plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Aegilops_tauschii plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCCCGCCTAGCTCAGTTGGTAGAGCTCAAGGTTCTTAGTTTGTTTGCTACCTGAGCAAGCCTGCCTTTCCTGCAGCCATCCTAGCCCCACGATTTAGGACATGTGGGGCTGAGATCACTGTTTGGAATGGTAGGACTGCCCAGGTAGCAAACCATAGAGGCTGGTTACCTTGTGGTCTTGGGTTCGAGCCCCAAGGCGGGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>........................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTAGGTTGTTTAACATTTATGGTAATATGGGTGAACCTAAGGGCTTAATTATCTCTTCCTTTTAATTATATAATATATAGATTGCCAAAGAGTTCACATC
Downstream sequence (upto 100nt)
ATTTCTTTTTGGTGCTTCCACATATTTTCTTTTCTTTCTGGATTTGTACCCTTTTTGACCGATTGTTTTAGGTATATGGGATAAGTTAGAGTTATGTATT
Mature tRNA
GCCCGCCUAGCUCAGUUGGUAGAGCUCAAGGUUCUUAACCUUGUGGUCUUGGGUUCGAGCCCCAAGGCGGGCA
Intron Sequence
GTTTGTTTGCTACCTGAGCAAGCCTGCCTTTCCTGCAGCCATCCTAGCCCCACGATTTAGGACATGTGGGGCTGAGATCACTGTTTGGAATGGTAGGACTGCCCAGGTAGCAAACCATAGAGGCTGGTT
Intron Position38-166
Infernal Score71.3
HMM Score43.10
Secondary structure Score28.20