Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID20776_PtRNAdb
Plant SourceBrassica oleracea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-C9.trna168
tRNA locuschr-C9 : 29081982 - 29081904 (-)
IsoacceptorThr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Thr isoacceptor in Brassica_oleracea plant by clicking on the isoacceptor]

IsodecoderAGT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGT isodecoder in Brassica_oleracea plant by clicking on the isodecoder]

tRNA Sequence
CTGACCTTATCTCAGTTGGTAGAGCAGAAGACTAGTTATCTTTAGGTCGTTGGTTTGAGTCCGGCAGGTCTGA
tRNA secondary structure
>.>>>>>...>>>........<<<..>>>>>.............<<<<<.....>>>>>.......<<<<<<<<<<.<.
Upstream sequence (upto 100nt)
ATGGTCGTCACTTACAGTTATAGGCACTGAACGTTTTGATTTTGGACGGCAAAAATCTTTAAGACATTTAGTACAGGTTAAATTCTTATCTCAGCAGAAG
Downstream sequence (upto 100nt)
TTTCTTTTGCCGTTTATATGTGTTTTGGAATCTGGTTTTGGGCTTTAGGCCTTCAACTCTTCCGGGCTTTCTTTTTGCTAGTTGAAGAAAACTCTCTCCA
Mature tRNA
CUGACCUUAUCUCAGUUGGUAGAGCAGAAGACUAGUUAUCUUUAGGUCGUUGGUUUGAGUCCGGCAGGUCUGA
Intron Sequence
CCTATA
Intron Position38-43
Infernal Score38.9
HMM Score19.60
Secondary structure Score19.30