Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID20233_PtRNAdb
Plant SourceBrassica oleracea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-C4.trna86
tRNA locuschr-C4 : 54913921 - 54913850 (-)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Brassica_oleracea plant by clicking on the isoacceptor]

IsodecoderTCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCC isodecoder in Brassica_oleracea plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGCAGACGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CCCGGTCCTCAGATAGTTGGTTATAACTTATAAATTATAATTAATATTTGTTTTTCTTTCTTTTTTAAATATATATGAAAGGAACATAACAAACACAGTA
Downstream sequence (upto 100nt)
ATAAAAGGTTTTTTAGTTGTAGAATTTGTTTGATTCTCTGTTTGGTGTCATAACTGACAAGGTTATTAACACTTAAATAAAAGGAAATAAGTATCTAATT
Mature tRNA
GCGUUUGUAGUCCAACGGUUAGGAUAAUUGCCUUCCAAGCAAUAGACCCGGGUUCGACUCCCGGCAGACGCA
HMM Score46.70
Secondary structure Score24.30