Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID2014_PtRNAdb
Plant SourceAegilops tauschii     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-3.trna212
tRNA locuschr-3 : 422366187 - 422366271 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Aegilops_tauschii plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Aegilops_tauschii plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTGTCGCAGATGAATCCTTAGGTCGCCGGTTCGAATCCGGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>...................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CAAGTACTGTTGATCAACAAATCGTGCGTCTGATGTATGGATCGAATCCTTGTCACAATTGTTTTGGATATAAAACTTAGTCATTTAAATCCATCACAAA
Downstream sequence (upto 100nt)
CGTGTTGTCGCTACTTTTTTTGTCTACAATTTCCTCTTTCTTTTCATCCTTCCTTTGAAAACCATGCTTGGGATGTGGTGGAATTCCACTTCAAGATAAA
Mature tRNA
CCGACCUUAGCUCAGUUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCCGGUUCGAAUCCGGCAGGUCGGA
Intron Sequence
TGTCGCAGATGA
Intron Position38-49
Infernal Score74.6
HMM Score42.10
Secondary structure Score32.50