Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID19935_PtRNAdb
Plant SourceBrassica oleracea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-C2.trna99
tRNA locuschr-C2 : 52554431 - 52554356 (-)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Brassica_oleracea plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Brassica_oleracea plant by clicking on the isodecoder]

tRNA Sequence
GGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGTGAGGCACGGGGTTCGATCGATCCCCCGCATCTCCA
tRNA secondary structure
>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>>>>>...........<<<<<<<<<.<<.
Upstream sequence (upto 100nt)
TTATTGAAAATATATCAAGTTAGTAAATGAACAAAGCTCAAGACAAAGAACGTAAATCCGAATGAATATATGTAATGTTGTCAATAATATTAACAAATTC
Downstream sequence (upto 100nt)
CAAGGTTTTTTTTATGCATGTTTTTTTTTTCAATTTAGAATACATTCATTACTCGCACCATTTTATCTAACTTCTAAATTTGCTCTCTCACAGATACAAA
Mature tRNA
GGGAUGUAGCUCAAAUGGUAGAGCGCUCGCUUUGCAUGCGUGAGGCACGGGGUUCGAUCGAUCCCCCGCAUCUCCA
HMM Score29.70
Secondary structure Score16.60