Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID19906_PtRNAdb
Plant SourceBrassica oleracea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-C2.trna72
tRNA locuschr-C2 : 56873351 - 56873423 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Brassica_oleracea plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Brassica_oleracea plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCG
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATAAAATATGTTCAGATTTCGTTCTTCTCTGCCAATGAAAAGTTAAATTAGTTTTTAACAGGTTAACGTTATAAATATTAATTGAGAAATACTAACAAAT
Downstream sequence (upto 100nt)
TTTCCTTTTTACTTTTAATTGATATTGTTTATTTAACAGTTTTTACTTTTTGAATTGACTAAATAAGAATCCCAACTACCTTCGTTTGTAAATCCTCTCT
Mature tRNA
GCCCGUCUAGCUCAGUUGGUAGAGCGCAAGGCUCUUAACCUUGUGGUCGUGGGUUCGAGCCCCACGGUGGGCG
HMM Score67.60
Secondary structure Score20.10