Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID19009_PtRNAdb
Plant SourceBrassica nigra     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B3.trna32
tRNA locuschr-B3 : 33685399 - 33685484 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Brassica_nigra plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Brassica_nigra plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGGTGGTGGCGCAGTTTGCTAGCGCGTAGGTCTCATAGCTATTTGAGTGATCCTGAGGTCGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>.....................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATGGATGTGTATGAAATGTTCAGGAAAGTCGAAGTTTGGCCTTTGATGTTGTTTAATTGTTATAGAAATTAATATGAAAAAGTGTCGCAGAATATCAATT
Downstream sequence (upto 100nt)
TTACTTTTTCTTTCATTTCTAGAAATCCAACCCTGCTACCTTACGGTTTTAGTAAAACGAGTTTGCTTGTACATCCCCCTCAACCAACTAGTAGCTACTG
Mature tRNA
GGGGUGGUGGCGCAGUUUGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTATTTGAGTG
Intron Position39-50
Infernal Score56.4
HMM Score32.70
Secondary structure Score23.70