Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID18456_PtRNAdb
Plant SourceBrassica napus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-C7.trna78
tRNA locuschr-C7 : 60226328 - 60226255 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Brassica_napus plant by clicking on the isoacceptor]

IsodecoderCAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAC isodecoder in Brassica_napus plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTCTGGGTGGTGTAGTCGGTTATCACGCTAGTCTCACACACTAGAGGTCCCCGGTTCGAACCAGGGCTCAGACA
tRNA secondary structure
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<.
Upstream sequence (upto 100nt)
GGATGCTTACTAGAATTATATATGATCTACAAAGACGCACGTAGTCTATAGGATGCTTAATAGAATTATATATCATTAATGACAAACTGCTAGCATCATA
Downstream sequence (upto 100nt)
TTTTCTACTTTTTTCTAAAGGAAAAATCCCTATATCATTTAGTTGCTGGCTTGCTGCTGGTTCCATTATCCATGTCCACTGGGTTCGGTAGATACCCACT
Mature tRNA
GUCUGGGUGGUGUAGUCGGUUAUCACGCUAGUCUCACACACUAGAGGUCCCCGGUUCGAACCAGGGCUCAGACA
HMM Score48.00
Secondary structure Score25.70