Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID1797_PtRNAdb
Plant SourceAegilops tauschii     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-2.trna427
tRNA locuschr-2 : 135251810 - 135251742 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Aegilops_tauschii plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Aegilops_tauschii plant by clicking on the isodecoder]

tRNA Sequence
TCCACTACTCAGTTGGTAGAGTACAAAGCTCTTAACCTTGTGGATATGGGTTCAAGCCCCATGGTGGAG
tRNA secondary structure
>>>>>>>>>>........<<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ACCCGACTCATCACATTGTAATGAGCCGGCCCTTGGGGGCTACCAATTGCTCCTGTCGAAAATTCAAGGTACACAAGCCTTAATCCATTATATTGAAAGA
Downstream sequence (upto 100nt)
ATTACATCATATGCTGTTATTATCAATGAATCATATACAAAGTCCCAGCTCGGTAATATCTTACTGACCCGGCCTTTGGGGGCTACACGTTGCTAGTGAA
Mature tRNA
UCCACUACUCAGUUGGUAGAGUACAAAGCUCUUAACCUUGUGGAUAUGGGUUCAAGCCCCAUGGUGGAG
HMM Score15.80
Secondary structure Score25.10