Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID17822_PtRNAdb
Plant SourceBrassica napus     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-C3.trna148
tRNA locuschr-C3 : 65225047 - 65224964 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Brassica_napus plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Brassica_napus plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTAGTTCAGTTGGTAGAGCGGAAGACTGTAGTTGTTGCTGTAATCTTTAGGTCGCTGGTTCGATTCCGGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>..................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AGTTCTGTCCTTTTGGTTATATTCATATATATTTTCTTTGTTTTCTCCGGAATGTTTCTAACACCTTTCTATATAAAGTTATATAAAGAAATTTATCAAT
Downstream sequence (upto 100nt)
ATTTTTTTATTTTTTTTTTAAGTTATCACTTCTAGGTTTAGAGATGTGTACTTGACGCGATCGCTTGTGGCCTTCTGGGATTGTTGCATGTAAACTTTAC
Mature tRNA
CCGACCUUAGUUCAGUUGGUAGAGCGGAAGACUGUAGAUCUUUAGGUCGCUGGUUCGAUUCCGGCAGGUCGGA
Intron Sequence
TTGTTGCTGTA
Intron Position38-48
Infernal Score68.9
HMM Score41.00
Secondary structure Score27.90