Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID16249_PtRNAdb
Plant SourceBrassica juncea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B8.trna53
tRNA locuschr-B8 : 72401578 - 72401650 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Brassica_juncea plant by clicking on the isoacceptor]

IsodecoderCGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CGC isodecoder in Brassica_juncea plant by clicking on the isodecoder]

tRNA Sequence
GGGGATGTAGCTCATATGGTAGAGCGCTCGCTTCGCATGCGAGAGGCACGGTGTTCGATTCCCCGCATCTCCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<.
Upstream sequence (upto 100nt)
CTACTTCATGAATAGAATTGGGCTTCACTTTTGGGCTTTTGAATTGATTCAGCCTCTTCTGAATTAATACTTTAAAAAGTAAATGTATTAAGAATCGTTC
Downstream sequence (upto 100nt)
ATTTTCTTTTAGACACACGTTGTGTAAATCTAAAGCTTGAATCTTCCTCACCAGTTATAACACACTGCAATAAAATCTCCGGAAACTTTCACAGATTTAG
Mature tRNA
GGGGAUGUAGCUCAUAUGGUAGAGCGCUCGCUUCGCAUGCGAGAGGCACGGUGUUCGAUUCCCCGCAUCUCCA
HMM Score39.60
Secondary structure Score17.90