Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID16111_PtRNAdb
Plant SourceBrassica juncea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B7.trna36
tRNA locuschr-B7 : 32378082 - 32378167 (+)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Brassica_juncea plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Brassica_juncea plant by clicking on the isodecoder]

tRNA Sequence
GGGGTGGTGGCGCAGTTGGCTAGCGCGTCGGTCTCATAATCCGGAGGTCGAGAGTTCTAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>.....................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CCATCATCCAAGACCATAACATAAGCCACCACTTTTCTTAACAACCTCCTGTACACACAGTTTTAAGGTTATGTTGTTTGATGCAGGAAGGTAGTACAAC
Downstream sequence (upto 100nt)
TTTACTTTTTTTATGAGTGGCCAGGTCGTGGTCCCTTTTTTTTTTGTCAAAACCAAACCTAAGTTTTAGGTTGACGGCTTGACGCTATAAATAAATCGGT
Mature tRNA
GGGGUGGUGGCGCAGUUGGCUAGCGCGUCGGUCUCAUAAUCCGGAGGUCGAGAGUUCUAGCCUCUCUCACCCCA
Intron Sequence
GCTATCTGAGTA
Intron Position39-50
Infernal Score57.3
HMM Score35.40
Secondary structure Score21.90