Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID16042_PtRNAdb
Plant SourceBrassica juncea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B7.trna129
tRNA locuschr-B7 : 32332642 - 32332571 (-)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Brassica_juncea plant by clicking on the isoacceptor]

IsodecoderTTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTT isodecoder in Brassica_juncea plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCCGTCTTAGCTCAGTGGTAGAGCGAGTGACTTTTAATCCCGTGGCCGTGGGTTCGATCCCCACAGACGGCG
tRNA secondary structure
>>>>>>>..>>>>.......<<<<..>.>>.......<<.<......>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CCATCGGTTTGTCAGAGTTGAAGATGCCACAAGGCTCACACAACACTTCCTCTACTATCATTGTGTACAAATTGACATTTGTAGGAAAGGATGCCAAGTA
Downstream sequence (upto 100nt)
GTAGTTGTTAACCTTTTTTACCCACAGATGACTTTTTGCTGATGCTAATAAGTAATAACTGTTGTTTTTCATAAATTCACCTTTTCAGAGACATCATCAA
Mature tRNA
GCCGUCUUAGCUCAGUGGUAGAGCGAGUGACUUUUAAUCCCGUGGCCGUGGGUUCGAUCCCCACAGACGGCG
HMM Score69.10
Secondary structure Score10.70