Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID15883_PtRNAdb
Plant SourceBrassica juncea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B5.trna65
tRNA locuschr-B5 : 34939881 - 34939809 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Brassica_juncea plant by clicking on the isoacceptor]

IsodecoderAAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAT isodecoder in Brassica_juncea plant by clicking on the isodecoder]

tRNA Sequence
GGCCTATTATCTCAGCTGGTTAGAGCCTCACGCTAATAACATGAAGGTCACAGGTTAAATCCTGTATAGGCTG
tRNA secondary structure
>>>>>>>...>>>.........<<<..>>>.>.......<.<<<.....>>>>>......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TGTGAGACGAAGAAGATACGGAGAGTCCAAAGGTGTTGTTAGTGCGTAATCAGAGAGCTAATATATTCATTAATTCCTTTTGACATAGTTTGATCAAAAA
Downstream sequence (upto 100nt)
TTCTTTTTATAATCTTTGGGAGAATTTGCTCAATATACAAAACACAAATGAAAATTAAGCATATGATACTGATTTTGACATATTTAAAAAACTAACATTT
Mature tRNA
GGCCUAUUAUCUCAGCUGGUUAGAGCCUCACGCUAAUAACAUGAAGGUCACAGGUUAAAUCCUGUAUAGGCUG
HMM Score17.90
Secondary structure Score22.50