Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID15785_PtRNAdb
Plant SourceBrassica juncea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B4.trna59
tRNA locuschr-B4 : 23433210 - 23433129 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Brassica_juncea plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Brassica_juncea plant by clicking on the isodecoder]

tRNA Sequence
B-Box
CCGACCTTAGCCTGGTTTAGAGCGGAGGACTGTAGTCGATGCGAATATCCTTAGGTCACTGGTTCGAATCCGGTAGGTCGGA
tRNA secondary structure
>>>>>>>..>>.>......<.<<.>>>>>..................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GGAAAATTATTTTTTCGAAAGAAGTTTCACGGTTGAAAGAACAAAAACTACTATTCTTATATGCGTATTATTACAATACATGCAGAATTATTCAAATAAT
Downstream sequence (upto 100nt)
AACTTTTCCTGAAAAAGTTTTCATATCTGTTTTGACATTTGGCATCTAAATAATGACGTGAACATATGTATTATGTCTAATGCATACATATTTTTGATGT
Mature tRNA
CCGACCUUAGCCUGGUUUAGAGCGGAGGACUGUAGAUCCUUAGGUCACUGGUUCGAAUCCGGUAGGUCGGA
Intron Sequence
TCGATGCGAAT
Intron Position36-46
Infernal Score40.3
HMM Score15.30
Secondary structure Score25.00