Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID15360_PtRNAdb
Plant SourceBrassica juncea     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B1.trna41
tRNA locuschr-B1 : 28838881 - 28838810 (-)
IsoacceptorPro

[NOTE: User can view the results of the consensus based study of all the tRNAs of Pro isoacceptor in Brassica_juncea plant by clicking on the isoacceptor]

IsodecoderAGG

[NOTE: User can view the results of the consensus based study of all the tRNAs of AGG isodecoder in Brassica_juncea plant by clicking on the isodecoder]

tRNA Sequence
GGGCGTTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGTGAGAGGTCCCGAGTTCAATTCTCGGAACGCCCC
tRNA secondary structure
>>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATCATATCGGAATATTTGCAGTAGAGCAAATTTACGTTTGGTTGATTTGTAATAGAAAAGCTCATTATCAAATACCATAATAATTATCTACTCGCAACAA
Downstream sequence (upto 100nt)
CATTTTTTGATGTCAAAAAAAATATATATCTGCTCGCTTCTTCTTCTTCTTCCTCTTTAACGAACAGAATCAATCTCCTCTGCTTAGGGTGTTTCATTTT
Mature tRNA
GGGCGUUUGGUCUAGUGGUAUGAUUCUCGCUUAGGGUGUGAGAGGUCCCGAGUUCAAUUCUCGGAACGCCCC
HMM Score31.80
Secondary structure Score32.00