Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID14056_PtRNAdb
Plant SourceBrachypodium distachyon     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-4.trna84
tRNA locuschr-4 : 22575696 - 22575616 (-)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Brachypodium_distachyon plant by clicking on the isoacceptor]

IsodecoderCAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAA isodecoder in Brachypodium_distachyon plant by clicking on the isodecoder]

tRNA Sequence
GCCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTGAAGAGCGTGGAGGTTCAAGTCCTCTTCAAGGCA
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CCGATCGATCGAAATACTCCAAGACTCCACCTTTGTCATATATTCCATATATCGCATTAGATAGATATCATATTCATGGAATACGATTCACTTTCAAGAT
Downstream sequence (upto 100nt)
TAATATGGAGAATGCTCATTCAATGAGCATTCCCCGTAGAAGTATTCCGGAAATCTGCGCCTGGCGCTCTCCTCTATCTTCTGAGGTCCTTAACCATCTC
Mature tRNA
GCCUUGAUGGUGAAAUGGUAGACACGCGAGACUCAAAAUCUCGUGCUGAAGAGCGUGGAGGUUCAAGUCCUCUUCAAGGCA
HMM Score34.30
Secondary structure Score22.50