Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID13308_PtRNAdb
Plant SourceBeta vulgaris     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna77
tRNA locuschr-6 : 36982080 - 36982006 (-)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Beta_vulgaris plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Beta_vulgaris plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGCCTGTTAGCTCAATTGGTAGAGCATTGTGTATGCAAATACACACAAATGTGGGTTCGAATCCCGCACGGGCTC
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>............<<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GGAGGTATACTAATTAGAGTTATATCAATGTATCACTATAGTACGAATTGGCTTGACTTAAGGGTGTTGGTCGGTATTGGAATTACACTTGCAATTTGAT
Downstream sequence (upto 100nt)
TCTTGCTTCAAGCACTTCTTATTTACATGGTCTTGTGGAACTTTTAGGATGTATTTTTCTCTTAATCTTGACATAACAATGCGGTAAACAAAAATATGAC
Mature tRNA
AGCCUGUUAGCUCAAUUGGUAGAGCAUUGUGUAUGCAACACAAAUGUGGGUUCGAAUCCCGCACGGGCUC
Intron Sequence
AATAC
Intron Position38-42
Infernal Score39.9
HMM Score26.10
Secondary structure Score13.80