Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID13258_PtRNAdb
Plant SourceBeta vulgaris     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-6.trna23
tRNA locuschr-6 : 32353515 - 32353589 (+)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Beta_vulgaris plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Beta_vulgaris plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGCATGTTAGCTCAATTGGTAGAGTATTGTGTATGCAAATACACAAAAATGTGGGTTCGAATCCCACATAGGCTC
tRNA secondary structure
>>>.>>>..>>>>........<<<<.>>>>>..........<<<<<....>>>>>.......<<<<<<<<.<<<.
Upstream sequence (upto 100nt)
GAGTGCAGCAACATGTCATTACTTTATAGTCTATGAGTAATGGTAATTGGATTGACTTAAGGGTGTCTGCTCGGTATTGGAATTATACTTGGAATTTGAT
Downstream sequence (upto 100nt)
TCTTATTTTTTAATATGCTTCAAGCACTTTTTATTTACATGGTCTTGTGGAACTTTTGGGATGTATGTTTCTCTTAATCCTGACAAAACAATGTGGTGAA
Mature tRNA
AGCAUGUUAGCUCAAUUGGUAGAGUAUUGUGUAUGCAACACAAAAAUGUGGGUUCGAAUCCCACAUAGGCUC
Intron Sequence
AAT
Intron Position38-40
Infernal Score35.2
HMM Score21.20
Secondary structure Score14.00