Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID13234_PtRNAdb
Plant SourceBeta vulgaris     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna87
tRNA locuschr-5 : 46828412 - 46828338 (-)
IsoacceptorAla

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ala isoacceptor in Beta_vulgaris plant by clicking on the isoacceptor]

IsodecoderTGC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TGC isodecoder in Beta_vulgaris plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGCCTGCTAGCTCAACTGGTAGAGTATTGTGTGTGCAAATACACAAAAATGTGGGTTCGACTCCCACACAGGCTC
tRNA secondary structure
>>>>>>...>>>>........<<<<.>>>>>..........<<<<<....>>>>>.......<<<<<.<<<<<<.
Upstream sequence (upto 100nt)
ATGTCAACATATCATTACTTTATGAGTTATGCCGATTTACTTGACTCAAGGGTGTTTGCTTGCACTAGTAGAATATTTGTAATTACGTTTGAAACAAGAT
Downstream sequence (upto 100nt)
CTATTACTAGATAAGCTTCAAGCACTTCTTGTTTACATGGTCTTGTTATGCTTTTAGGATGTGATTTTGCTCTTTAGCCGGCATGACCTAACAAAAACAA
Mature tRNA
AGCCUGCUAGCUCAACUGGUAGAGUAUUGUGUGUGCAACACAAAAAUGUGGGUUCGACUCCCACACAGGCUC
Intron Sequence
AAT
Intron Position38-40
Infernal Score36.2
HMM Score17.20
Secondary structure Score19.00