Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID13188_PtRNAdb
Plant SourceBeta vulgaris     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna43
tRNA locuschr-5 : 21111819 - 21111888 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Beta_vulgaris plant by clicking on the isoacceptor]

IsodecoderAAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAG isodecoder in Beta_vulgaris plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AACCTATTAGCTCAATTGGCAAAACATTGTGTAAGACACAACGATGTAGGTTCGAATCCTACATAGGTTT
tRNA secondary structure
>>>>>>>..>.>..........<.<.>>>>>.....<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATACTATGTTTTTATCAGTTTCCAAAGTATTGTTATTAGTTGCTGTTTTAAAGCCATTTGTTACCCCCTCTCACTAACATATATTTGGCGAAATTCATAC
Downstream sequence (upto 100nt)
AACAATAATCAAAGTTAAAATAAGTTACCCTTAAAATCTAAAAAGTTGTCCTAAAAATGGTGAAAGTTACCCTAAAAGTGGTAATAGTTACTCTTATAAT
Mature tRNA
AACCUAUUAGCUCAAUUGGCAAAACAUUGUGUAAGACACAACGAUGUAGGUUCGAAUCCUACAUAGGUUU
HMM Score12.50
Secondary structure Score17.20