Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID13125_PtRNAdb
Plant SourceBeta vulgaris     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-5.trna115
tRNA locuschr-5 : 9977360 - 9977292 (-)
IsoacceptorIle

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ile isoacceptor in Beta_vulgaris plant by clicking on the isoacceptor]

IsodecoderTAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAT isodecoder in Beta_vulgaris plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGTCTATTAGTTCAAATGGTAGAGCATTGTGCTATGCACAAGATGTGGGTTCGAATCCCACATAGGCTA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>.........<<<...>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATGTTCTTTTTATATAATAAGCTCAAATGAAGCTTCAAAAAGCAGATAATAGAATAAAGAAAAAGTAAGTATTGTGTGTGTGGTTTCACTCGTACTTTAA
Downstream sequence (upto 100nt)
TGAAATGATAGATTACTAAACATAAAGGAGAAGAATTTAGTACAATAACACTCATGTATACTAAAACCAAAATTGAAAATCGTCATTATCTTGACTGAAA
Mature tRNA
GGUCUAUUAGUUCAAAUGGUAGAGCAUUGUGCUAUGCACAAGAUGUGGGUUCGAAUCCCACAUAGGCUA
HMM Score30.00
Secondary structure Score10.20