Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID12827_PtRNAdb
Plant SourceBathycoccus prasinos     |     Cryptogamae -->Algae
Genome levelNuclear
tRNA IDchr-6.trna3
tRNA locuschr-6 : 449857 - 449672 (-)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Bathycoccus_prasinos plant by clicking on the isoacceptor]

IsodecoderGCT

[NOTE: User can view the results of the consensus based study of all the tRNAs of GCT isodecoder in Bathycoccus_prasinos plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GCAGACGTGGCCGAGTGGTTAAGGCGTTCGGCTGCTATTCGATCAACTAGAAACCAACTGTCCACACTCACTTCTATTTCAATCTCAGCATTGAGATATCCAACACACGAGCATTGTGAATACCAATGATACACGACTGTTACTGAATACCCAACGGGTGCGCGAGTTCGAACCTCGTCGTCTGCG
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>...............................................................................................................<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AAGAACGAAACCCTAACTCTTTTTCAAGCCTGTTTTTTGAACCCTTTGTAACTTTTTTAATACACCATCTCGTAAACCCTACCTCGTAATATACACAAGA
Downstream sequence (upto 100nt)
TCTTTCTTTTTTTTTGTTTGTCGTTGTTTCTTCTTCGTTATCGTGTTGTTTCGCGTCGTCGTCGAGTGTTGCGTATGGCGCGAATCTCTGCTCTCGGTGG
Mature tRNA
GCAGACGUGGCCGAGUGGUUAAGGCGUUCGGCUGCUAACUGAAUACCCAACGGGUGCGCGAGUUCGAACCUCGUCGUCUGCG
Intron Sequence
TTCGATCAACTAGAAACCAACTGTCCACACTCACTTCTATTTCAATCTCAGCATTGAGATATCCAACACACGAGCATTGTGAATACCAATGATACACGACTGTT
Intron Position38-141
Infernal Score62.2
HMM Score41.10
Secondary structure Score21.10