Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID12808_PtRNAdb
Plant SourceBathycoccus prasinos     |     Cryptogamae -->Algae
Genome levelNuclear
tRNA IDchr-10.trna1
tRNA locuschr-10 : 622212 - 622283 (+)
IsoacceptoriMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of iMet isoacceptor in Bathycoccus_prasinos plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Bathycoccus_prasinos plant by clicking on the isodecoder]

tRNA Sequence
AGCGAACTGGCGCAGCGGAAGCGCGTTGGGCCCATAACCCAAAGGTCACACGATCGAAACGTGTGTTCGCTA
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CTAACTGTAATAAGCAATTTTAGGAAAAAAAAATATTTAGGGCTTGAACTGTGTCCTTTATATTTACACAACTAAACCCTACAGGAGATACGCACACAAA
Downstream sequence (upto 100nt)
AGCGAATTTTTTTTTGCATTATATGTACGTGCGCGGTACGTGCGCGTCGATTGGCATCGTTTAGAGGTGTATTTTAGTTCAGGTTGTTCATATGAATGTT
Mature tRNA
AGCGAACUGGCGCAGCGGAAGCGCGUUGGGCCCAUAACCCAAAGGUCACACGAUCGAAACGUGUGUUCGCUA
HMM Score20.10
Secondary structure Score36.80