Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID12275_PtRNAdb
Plant SourceAsparagus officinalis     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-10.trna42
tRNA locuschr-10 : 34216615 - 34216529 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Asparagus_officinalis plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Asparagus_officinalis plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGTTGGTGGCACAGTCGGCTGGCGCGTAGGTCTCATTACTAATATGAGTCATCCTGCGGTCGAGAGTTCGAGCCTTTCTTTACCCA
tRNA secondary structure
>>>>.>>..>>.>.........<.<<.>>>>......................<<<<.....>>>>>.......<<<<<<<.<<<<.
Upstream sequence (upto 100nt)
TACACATGTCTTAAGCCAGTTCGTTCTTTTCTAATTCCTTTTGTTTTGTGAAAATTTAAATGTAGAGATAAAAATAAATTAATCATCAATTAAAGATCAC
Downstream sequence (upto 100nt)
AGCGTGACTTTTTCTCTCAATTGTGTTCATTGTTTAAATCCTTTTTTATCCACTCTCTGATTGTAAAGCAAAATTTATTTGTTCGTATTAGTTTTTTGAA
Mature tRNA
GGGUUGGUGGCACAGUCGGCUGGCGCGUAGGUCUCAUUAUCCUGCGGUCGAGAGUUCGAGCCUUUCUUUACCCA
Intron Sequence
ACTAATATGAGTC
Intron Position39-51
Infernal Score27.8
HMM Score17.10
Secondary structure Score10.70