Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID11949_PtRNAdb
Plant SourceArachis monticola     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B08.trna76
tRNA locuschr-B08 : 136221253 - 136221324 (+)
IsoacceptorGly

[NOTE: User can view the results of the consensus based study of all the tRNAs of Gly isoacceptor in Arachis_monticola plant by clicking on the isoacceptor]

IsodecoderTCC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TCC isodecoder in Arachis_monticola plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GCGTCAGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGATCCGGGTTCGACTCCCGGCTGACGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
AAGATCGATCAGAAAAGAGTCAAAAGAGCATGGTTATTCTTGAAATTGATTGCAAATAATCAACATATAAAATATCAAGTTCTTTGGCCGTACATTGAAA
Downstream sequence (upto 100nt)
GTAATATTAAAACATTATTATTGATCAATGTGTTATAGCATATTCTACTTTCTTTTCTTTATGTTTTTATAATTTAATTAATCAATGTGTTATAGTATAT
Mature tRNA
GCGUCAGUAGUCCAACGGUUAGGAUAAUUGCCUUCCAAGCAAUAGAUCCGGGUUCGACUCCCGGCUGACGCA
HMM Score44.40
Secondary structure Score26.90