Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID11614_PtRNAdb
Plant SourceArachis monticola     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B06.trna141
tRNA locuschr-B06 : 28218715 - 28218643 (-)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Arachis_monticola plant by clicking on the isoacceptor]

IsodecoderTTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTC isodecoder in Arachis_monticola plant by clicking on the isodecoder]

tRNA Sequence
GCCCCCATCGTCTAGTGGTCCAGGACATCTCTCTTTCAAGAAGGCAACGGGGATTCGACTTCTCCTGGGGGTA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>.>.......<.<<<....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CGCAACGACATTCTTTGTGCAGACGCCTTAGTAGCCTTCATGCGCGAATGGGAAAACTATTTATACTAAGAACATAGCATAACGGCGGTCGGGAAAGTGG
Downstream sequence (upto 100nt)
GGTACTACGAAAGGAAGTTGATCATGGATCATCTAAAAAGAATCAAATTGATTCTTCCTGGGTCGATGCCCGAGTGGTTAATGGGGACGGACTGTAACGT
Mature tRNA
GCCCCCAUCGUCUAGUGGUCCAGGACAUCUCUCUUUCAAGAAGGCAACGGGGAUUCGACUUCUCCUGGGGGUA
HMM Score12.70
Secondary structure Score18.50