Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID11585_PtRNAdb
Plant SourceArachis monticola     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-B06.trna112
tRNA locuschr-B06 : 97498844 - 97498760 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Arachis_monticola plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Arachis_monticola plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGTGGTGGCGCAGTTGGCTAGCGCGTAGGTCTCATAGCTTAAGAGTAATCCTAAGGTCGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>....................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ATTATAAACATAAACACAAAGTTGGTTTCTTGTAATTATTTTTTAAAAAAAATGTCAAAAGTAATAATCATAATACACAGCACGAAAAATACATGCACAT
Downstream sequence (upto 100nt)
CTATTTTTTATTTTACTAATTTACTTATTCTTACATAATTAAGTTATGATTTACTAATTTACTTATTCTTACATAATTAAGCTATGATTTAACTCTCTCA
Mature tRNA
GGGGUGGUGGCGCAGUUGGCUAGCGCGUAGGUCUCAUAAUCCUAAGGUCGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTTAAGAGTA
Intron Position39-49
Infernal Score66.4
HMM Score40.70
Secondary structure Score25.70