Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID113451_PtRNAdb
Plant SourceNelumbo nucifera     |     Phanerogamae -->Dicot
Genome levelMitochondrial
tRNA IDMt.trna8
tRNA locusMt : 289193 - 289262 (+)
IsoacceptorAsp

[NOTE: User can view the results of the consensus based study of all the tRNAs of Asp isoacceptor in Nelumbo_nucifera plant by clicking on the isoacceptor]

IsodecoderGTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTC isodecoder in Nelumbo_nucifera plant by clicking on the isodecoder]

tRNA Sequence
B-Box
CGGGAAATCGCTAAGTTGGTTAGAGTCCTGGTCCGTCACGCCAGAAGTCGCGGGTTCGAACCCCTCCTGG
tRNA secondary structure
>>>......>>>...........<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<.
Upstream sequence (upto 100nt)
AGTAAGAAAGCGGTCTTTCAGTCTTTAACAGTTGCTTCAAAAGTCAATTCAAGGTTTCCTTTTTTTTTAAGTATGAGCTCTCATTGAGAGAGCGTTTCGG
Downstream sequence (upto 100nt)
TGGAATAAGTCGAAGTTGCGGGATCCTGGGTACAACGAGACCGCAACTACGGAAGGAAGGAAATGGGAGCCCTAAGATGATGTTATGAAGGCGGCGATTC
Mature tRNA
CGGGAAAUCGCUAAGUUGGUUAGAGUCCUGGUCCGUCACGCCAGAAGUCGCGGGUUCGAACCCCUCCUGG
HMM Score19.50
Secondary structure Score-4.20