Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID113431_PtRNAdb
Plant SourceNelumbo nucifera     |     Phanerogamae -->Dicot
Genome levelMitochondrial
tRNA IDMt.trna14
tRNA locusMt : 455948 - 456020 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Nelumbo_nucifera plant by clicking on the isoacceptor]

IsodecoderTTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTT isodecoder in Nelumbo_nucifera plant by clicking on the isodecoder]

tRNA Sequence
GGGTGTATAGCTCAGTTGGTAGAGCATTGGGCTTTTAACCTAATGGTCGCAGGTTCAAGTCCTGCTATACCCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CAGTACGAGCCTCATACAGAGCCGCGCCCCTTTAATATGATGAGAAGAAGCCCTCTTTTCTTTTCCGCACCAATCCTTATTTACTACTACATCTTTTTTT
Downstream sequence (upto 100nt)
AACCTACCTTACACTCTACTATGAGTAAGGATGCGTAGTAGCGTTCAAAGATCACTCTTTGGCCTTTAGACTCGCTTCGGCGACTTCGCTCGTTGGGTGA
Mature tRNA
GGGUGUAUAGCUCAGUUGGUAGAGCAUUGGGCUUUUAACCUAAUGGUCGCAGGUUCAAGUCCUGCUAUACCCA
HMM Score59.70
Secondary structure Score15.30