Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID113349_PtRNAdb
Plant SourceGossypium hirsutum     |     Phanerogamae -->Dicot
Genome levelMitochondrial
tRNA IDMt.trna32
tRNA locusMt : 57371 - 57300 (-)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Gossypium_hirsutum plant by clicking on the isoacceptor]

IsodecoderGAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAC isodecoder in Gossypium_hirsutum plant by clicking on the isodecoder]

tRNA Sequence
B-Box
AGGGATATAACTCTGCGGTAGAGTGTCACCTTGACGCGGAGGTGGTCATCAGTTCGAGTCAGATTATCCCTA
tRNA secondary structure
>>>>>>>..>>>>.......<<<<.>>.>>.......<<.<<.....>>>.>.......<.<<<<<<<<<<.
Upstream sequence (upto 100nt)
TATCTATATGATCCGGCCAATTGCGTAAAGCCCGCGCTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTATTTCTTGATGGGGGGCAGGGA
Downstream sequence (upto 100nt)
AACCCAATGTGAGTTTTTCTTTTGCCTTGCACCCCCTCCGTGAATGGGAACCCTCAAGCCCACTTTCCCACCCCCGCCCCGTAGAGGGAAATTTACCTGT
Mature tRNA
AGGGAUAUAACUCUGCGGUAGAGUGUCACCUUGACGCGGAGGUGGUCAUCAGUUCGAGUCAGAUUAUCCCUA
HMM Score25.40
Secondary structure Score13.20