Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID113225_PtRNAdb
Plant SourceCucurbita pepo     |     Phanerogamae -->Dicot
Genome levelMitochondrial
tRNA IDMt.trna8
tRNA locusMt : 304956 - 305034 (+)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Cucurbita_pepo plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Cucurbita_pepo plant by clicking on the isodecoder]

tRNA Sequence
GGGTCGATGCGAGAGCGGTTAATGTGTAGGGACTGTAAATATGTCTACGCTGGTTCAAATCCAGCTCGGCCCA
tRNA secondary structure
>>>>>>>....>..........<...>....>.............<<.......>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CTTTCAAGGAGGCAGCTGGGATTCGCCTTCGCCTGTGGGTAGGGTACTCCGAAAGGAAGTGGATCATGGATTATGAATAAGCTTGTAATGTATTCTTCCC
Downstream sequence (upto 100nt)
CTACCACTAATTCGCGTATCCCACCATAAAATGATATGTTCCATTTGTCCTTCGCCAGAACTGCTTGATATGAAGGAAGGAATAGTAACCCCTCCCTCTT
Mature tRNA
GGGUCGAUGCGAGAGCGGUUAAUGUGUAGGGACUGUAAAUAUGUCUACGCUGGUUCAAAUCCAGCUCGGCCCA
Intron Sequence
ATGGCA
Intron Position39-44
Infernal Score23.8
HMM Score27.00
Secondary structure Score-3.20